| Title | Time | Room | Instructor |
|---|---|---|---|
| Molecular Dynamics Simulations of Proteins | 12.04.2023 08:00 - 18:00 (Wed) | Lab Meeting room ground-floor | Schanda, Paul |
| Molecular Dynamics Simulations of Proteins | 13.04.2023 08:00 - 13:15 (Thu) | Big Seminar Room A (small) 27 seats | Schanda, Paul |
| Molecular Dynamics Simulations of Proteins | 13.04.2023 14:30 - 18:00 (Thu) | Big Seminar Room A (small) 27 seats | Schanda, Paul |
Description:
This course will provide the practical and theoretical (see the prerequisites!) basis for allowing participants to set up, run and analyse MD simulations of proteins.
The course is taught by Christophe Chipot and François Dehez together with Paul Schanda.
Capacity:
5/10
Course Code:
C_BIO-4004_S23
Course instructor(s):
Paul Schanda
Main Contact:
Paul Schanda
Course type:
Taught course
Course level:
Advanced/specialized
Primary Track:
Biology
Secondary Track(s):
Computer Science
Physics
Course format:
On campus
Duration:
Blocked course
ECTS:
3
Semester:
Spring 1
Minimum number of participants:
5
Target audience:
Structural biologists with a strong interest in protein dynamics.
Prerequisites:
Read the book by Benoit Roux "Computational Modeling And Simulations Of Biomolecular Systems". Install NAMD and VMD and/or make sure to have access to these on the cluster. These things are absolutely essential, and participants will be accepted only if they have thoroughly read the book.
Teaching format:
The course is set up for a small group and will comprise theoretical presentations and practical elements. For the latter, participants will use software for MD simulations, namely NAMD and VMD.
Assessment form(s):
Participation, possibly a final exam (under evaluation).
Grading scheme:
Pass/fail
Course Category:
Credit Course
Academic Year:
AY 2022/23